Last updated: 2022-10-03
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BAUH_2020_MND-single-cell/analysis/
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Untracked files:
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Unstaged changes:
Modified: analysis/2022-05-03_pilot3_Cell-demultiplexing-Lenti.Rmd
Modified: analysis/index.Rmd
Modified: config/config_pilot3.0_MN.yml
Modified: config/config_pilot3.0_iPSC.yml
Modified: workflow/demuxlet_jobs/demux_capture5.sh
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File | Version | Author | Date | Message |
---|---|---|---|---|
html | ea94c29 | cazodi | 2022-09-30 | push fastqc |
html | b38f276 | cazodi | 2022-09-29 | pilot 4 lenti fastQC |
html | 927ff1d | cazodi | 2022-07-16 | pilot 4 |
Rmd | feed601 | cazodi | 2022-05-03 | figures for chris about celltype abundance |
html | feed601 | cazodi | 2022-05-03 | figures for chris about celltype abundance |
html | 8ac0d8a | cazodi | 2022-03-30 | update rmarkdown |
Rmd | d01f3b8 | cazodi | 2022-03-30 | testing snp filtering for vireo |
html | d01f3b8 | cazodi | 2022-03-30 | testing snp filtering for vireo |
html | 2c95e3b | cazodi | 2022-03-09 | add stats to demulxiplexing results |
Rmd | c683543 | cazodi | 2022-03-09 | updated c5 lenti barcode analysis and donor assignment comparisons |
html | c683543 | cazodi | 2022-03-09 | updated c5 lenti barcode analysis and donor assignment comparisons |
Rmd | 77c6459 | cazodi | 2022-03-02 | add joint cell calling results |
html | 77c6459 | cazodi | 2022-03-02 | add joint cell calling results |
html | 3f19b81 | cazodi | 2022-03-01 | update index |
Rmd | 9eb9fcc | cazodi | 2022-03-01 | add rmd for dropkick and dropletqc |
html | 9eb9fcc | cazodi | 2022-03-01 | add rmd for dropkick and dropletqc |
Rmd | a1fa048 | cazodi | 2022-03-01 | fix cellbenderGPU and update lenti downstream analysis |
html | a1fa048 | cazodi | 2022-03-01 | fix cellbenderGPU and update lenti downstream analysis |
Rmd | 0f7f43b | cazodi | 2022-02-28 | lenti barcodes vs vireo results for ipscs |
html | 0f7f43b | cazodi | 2022-02-28 | lenti barcodes vs vireo results for ipscs |
Rmd | bddd52c | cazodi | 2022-02-25 | lenti barcode analysis |
html | bddd52c | cazodi | 2022-02-25 | lenti barcode analysis |
Rmd | 8e5ef43 | cazodi | 2022-01-12 | at2 analysis update |
Rmd | f75c7ba | cazodi | 2022-01-11 | updated pipeline for pilot3 |
html | f75c7ba | cazodi | 2022-01-11 | updated pipeline for pilot3 |
Rmd | 6a5fef0 | cazodi | 2021-10-01 | posthoc dropletQC |
html | 6a5fef0 | cazodi | 2021-10-01 | posthoc dropletQC |
Rmd | 1728604 | cazodi | 2021-09-29 | add pilot1 analysis to workflowr |
html | 1728604 | cazodi | 2021-09-29 | add pilot1 analysis to workflowr |
Rmd | 67135d3 | cazodi | 2021-09-28 | added initial dropletQC results |
html | 67135d3 | cazodi | 2021-09-28 | added initial dropletQC results |
Rmd | c703e21 | cazodi | 2021-09-27 | added workflowr pages for cell calling with emptydroplet and dropkick |
html | c703e21 | cazodi | 2021-09-27 | added workflowr pages for cell calling with emptydroplet and dropkick |
Rmd | e5d517e | cazodi | 2021-08-06 | dropkick figures |
html | e5d517e | cazodi | 2021-08-06 | dropkick figures |
html | 2899feb | cazodi | 2021-08-06 | private to public |
html | 6f4a1f3 | cazodi | 2021-08-06 | different link |
Rmd | 679ded7 | cazodi | 2021-08-06 | updates for davis |
html | 679ded7 | cazodi | 2021-08-06 | updates for davis |
Rmd | b200a1f | cazodi | 2020-03-18 | removing accidental commits by christina… |
Rmd | 9057b09 | cazodi | 2020-03-18 | Revert "initial repo change" |
Rmd | 0c6d3c6 | cazodi | 2020-03-18 | initial repo change |
Rmd | c57ac08 | Christina Azodi | 2019-11-26 | First init |
Rmd | b1f309c | Davis McCarthy | 2019-02-06 | Updating template with improvements. |
Rmd | d73fd37 | Davis McCarthy | 2019-01-10 | Initial commit |
Key findings:
Data available 2021-04
Data available 2021-12-23
Side analyses:
Data available 2022-07-04
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work is licensed under a
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