License

Last updated: 2021-02-17

Checks: 2 0

Knit directory: KEJP_2020_splatPop/

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R Markdown file: up-to-date

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Repository version: 0286c19

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Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/.DS_Store
    Ignored:    data/1000GP_Phase3_sample_info.txt
    Ignored:    data/ALL.chr2.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.EURO.0.99.MAF05.filtered.vcf
    Ignored:    data/Diabetes/
    Ignored:    data/IBD/
    Ignored:    data/agg_IBD-ss2.rds
    Ignored:    data/agg_NeuroSeq-10x_D11-pool6-filt.rds
    Ignored:    data/agg_NeuroSeq-10x_D11-pool6.rds
    Ignored:    data/agg_diabetes-ss2.rds
    Ignored:    data/agg_iPSC-ss2_D0.rds
    Ignored:    data/covid/
    Ignored:    data/cuomo_NeuroSeq_10x_all_sce.rds
    Ignored:    data/pseudoB_IBD-ss2.rds
    Ignored:    data/pseudoB_NeuroSeq-10x_D11-pool6-filt.rds
    Ignored:    data/pseudoB_NeuroSeq-10x_D11-pool6.rds
    Ignored:    data/pseudoB_diabetes-ss2.rds
    Ignored:    data/pseudoB_iPSC-ss2_D0.rds
    Ignored:    data/sce_IBD-ss2.rds
    Ignored:    data/sce_IBD-ss2_HC2.rds
    Ignored:    data/sce_NeuroSeq-10x_D11-pool6-filt-mita1FPP.rds
    Ignored:    data/sce_NeuroSeq-10x_D11-pool6-filt.rds
    Ignored:    data/sce_NeuroSeq-10x_D11-pool6-mita1FPP.rds
    Ignored:    data/sce_NeuroSeq-10x_D11-pool6.rds
    Ignored:    data/sce_diabetes-ss2.rds
    Ignored:    data/sce_diabetes-ss2_T2D-5.rds
    Ignored:    data/sce_iPSC-ss2_D0-joxm39.rds
    Ignored:    data/sce_iPSC-ss2_D0.rds
    Ignored:    output/00_Figures/
    Ignored:    output/01_sims/

Untracked files:
    Untracked:  .DS_Store
    Untracked:  KEJP_2020_splatPop.Rproj
    Untracked:  code/1_process-empirical-data.R
    Untracked:  code/2_estimate-splatPopParams.R
    Untracked:  code/4_simulate_DEG.R
    Untracked:  docs/

Unstaged changes:
    Modified:   README.md
    Modified:   code/plot_functions.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (public/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	c57ac08	Christina Azodi	2019-11-26	First init
Rmd	b1f309c	Davis McCarthy	2019-02-06	Updating template with improvements.
Rmd	d73fd37	Davis McCarthy	2019-01-10	Initial commit