Last updated: 2021-02-17

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Knit directory: KEJP_2020_splatPop/

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Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/.DS_Store
    Ignored:    data/1000GP_Phase3_sample_info.txt
    Ignored:    data/ALL.chr2.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.EURO.0.99.MAF05.filtered.vcf
    Ignored:    data/Diabetes/
    Ignored:    data/IBD/
    Ignored:    data/agg_IBD-ss2.rds
    Ignored:    data/agg_NeuroSeq-10x_D11-pool6-filt.rds
    Ignored:    data/agg_NeuroSeq-10x_D11-pool6.rds
    Ignored:    data/agg_diabetes-ss2.rds
    Ignored:    data/agg_iPSC-ss2_D0.rds
    Ignored:    data/covid/
    Ignored:    data/cuomo_NeuroSeq_10x_all_sce.rds
    Ignored:    data/pseudoB_IBD-ss2.rds
    Ignored:    data/pseudoB_NeuroSeq-10x_D11-pool6-filt.rds
    Ignored:    data/pseudoB_NeuroSeq-10x_D11-pool6.rds
    Ignored:    data/pseudoB_diabetes-ss2.rds
    Ignored:    data/pseudoB_iPSC-ss2_D0.rds
    Ignored:    data/sce_IBD-ss2.rds
    Ignored:    data/sce_IBD-ss2_HC2.rds
    Ignored:    data/sce_NeuroSeq-10x_D11-pool6-filt-mita1FPP.rds
    Ignored:    data/sce_NeuroSeq-10x_D11-pool6-filt.rds
    Ignored:    data/sce_NeuroSeq-10x_D11-pool6-mita1FPP.rds
    Ignored:    data/sce_NeuroSeq-10x_D11-pool6.rds
    Ignored:    data/sce_diabetes-ss2.rds
    Ignored:    data/sce_diabetes-ss2_T2D-5.rds
    Ignored:    data/sce_iPSC-ss2_D0-joxm39.rds
    Ignored:    data/sce_iPSC-ss2_D0.rds
    Ignored:    output/00_Figures/
    Ignored:    output/01_sims/

Untracked files:
    Untracked:  .DS_Store
    Untracked:  KEJP_2020_splatPop.Rproj
    Untracked:  code/1_process-empirical-data.R
    Untracked:  code/2_estimate-splatPopParams.R
    Untracked:  code/4_simulate_DEG.R
    Untracked:  docs/

Unstaged changes:
    Modified:   README.md
    Modified:   code/plot_functions.R

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (public/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd c57ac08 Christina Azodi 2019-11-26 First init
Rmd b1f309c Davis McCarthy 2019-02-06 Updating template with improvements.
Rmd d73fd37 Davis McCarthy 2019-01-10 Initial commit

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