Last updated: 2022-01-10

Checks: 6 1

Knit directory: Hinch2019/

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Unstaged changes:
    Modified:   analysis/Crossover-identification-with-sscocaller-and-comapr.Rmd
    Modified:   analysis/index.Rmd
    Modified:   analysis/rejy.bib
    Modified:   run_alignment.snk
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    Modified:   sampleNames_meta.txt
    Modified:   submit-mergeBams.sh
    Modified:   submit-runDenovoVC.sh
    Modified:   submit-wgetSRAFastqdump.sh

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File Version Author Date Message
html c9092be rlyu 2022-01-08 home page title
Rmd 5ccd8cb rlyu 2021-12-17 update readme
Rmd ddf2dbf rlyu 2021-11-28 adding index.html file
html ddf2dbf rlyu 2021-11-28 adding index.html file

Introduction

Application of comapr on public dataset

1 comapr application on mouse sperm dataset


devtools::session_info()
─ Session info ───────────────────────────────────────────────────────────────
 setting  value                               
 version  R version 4.1.0 (2021-05-18)        
 os       Red Hat Enterprise Linux 8.4 (Ootpa)
 system   x86_64, linux-gnu                   
 ui       X11                                 
 language (EN)                                
 collate  en_AU.UTF-8                         
 ctype    en_AU.UTF-8                         
 tz       Australia/Melbourne                 
 date     2022-01-10                          

─ Packages ───────────────────────────────────────────────────────────────────
 package     * version date       lib source        
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 pillar        1.6.3   2021-09-26 [1] CRAN (R 4.1.0)
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 promises      1.2.0.1 2021-02-11 [1] CRAN (R 4.1.0)
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 rlang         0.4.11  2021-04-30 [1] CRAN (R 4.1.0)
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 rstudioapi    0.13    2020-11-12 [1] CRAN (R 4.1.0)
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 stringr       1.4.0   2019-02-10 [1] CRAN (R 4.1.0)
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[1] /mnt/beegfs/mccarthy/scratch/general/rlyu/Software/R/Rlib/4.1.0/yeln
[2] /opt/R/4.1.0/lib/R/library